NEWS
hubData 1.3.0
- Support the determination of hub schema from v4 configuration files (#63). Also fixes bug in
create_hub_schema()
where output_type_id
data type was being incorrectly auto-determined as logical
when only point estimate output types where being collected by a hub. Now character
data type is returned for the output_type_id
for all schema versions in such situations when auto-determined.
hubData 1.2.3
- Fix bug in
create_hub_schema()
where output_type_id
data type was being incorrectly determined as Date
instead of character
(Reported in https://github.com/reichlab/variant-nowcast-hub/pull/87#issuecomment-2387372238).
hubData 1.2.2
- Remove dependency on development version of
arrow
package and bump required version to 17.0.0.
hubData 1.2.1
- Removed dependency on development version of
zoltr
package.
- Fixed minor error in
connect_hub()
article.
hubData 1.2.0
- Adds a
skip_checks
parameter to the connect_hub
and connect_model_output
functions. When skip_checks
is set to TRUE
, these functions will bypass the default behavior of scanning the hub's model output directory for invalid files. Omitting these checks results in better performance when connecting to cloud-based hubs but can result in errors when querying the data. This option is only valid when connecting to hubs that meet the following criteria:
- the model output directory contains only model output data (no
README.md
, for example)
- the model output files use a single file format.
hubData 1.1.1
- Fix {tidyselect} warnings by converting internal syntax
- Bump required dplyr version to 1.1.0
hubData 1.1.0
- Add
"from_config"
option to the output_type_id_datatype
argument in create_hub_schema()
, coerce_to_hub_schema()
and connect_hub()
. This allows users to set the hub level output_type_id
column data type through the tasks.json
output_type_id_datatype
property introduced in schema version v3.0.1. (#44)
hubData 1.0.0
- Breaking change:
expand_model_out_val_grid()
and create_model_out_submit_tmpl()
are now defunct. These functions have been moved to hubValidations
and replaced by hubValidations::expand_model_out_grid()
and hubValidations::submission_tmpl()
, respectively. The old functions will now fail if called and will be removed in a future release.
hubData 0.2.0
- Adds back-compatible support in
create_hub_schema()
for determining a hub's schema from v3.0.0 sample output type configurations in tasks.json
files (#27).
- Adds back-compatible support for v3.0.0 sample output type configuration in
tasks.json
files. The primary change is how output_type_id
values for sample output types are handled in expand_model_out_val_grid()
. By default, all valid task ID value combinations are expanded, as per any other output type, but NA
s are returned in the output_type_id
column. However, if new argument include_sample_ids
is set to TRUE
, example sample IDs are included in the output_type_id
column, demonstrating how compound tasks IDs group rows of task ID combinations into samples. These are unique across modeling tasks. In create_model_out_submit_tmpl()
, example sample IDs are included in the output_type_id
column by default (#30).
hubData 0.1.1
- Add
collect_zoltar()
, which retrieves data from a zoltardata.com project and transforms it from Zoltar's native download format into a hubverse one. Zoltar (documentation here) is a pre-hubverse research project that implements a repository of model forecast results, including tools to administer, query, and visualize uploaded data, along with R and Python APIs to access data programmatically (zoltr and zoltpy, respectively.)
hubData 0.1.0
- Add
collect_hub()
which wraps dplyr::collect()
and, where possible, converts the output to a model_out_tbl
class object by default. The function also accepts additional arguments that can be passed to as_model_out_tbl()
.
- Allow for parsing
tasks.json
config files where both required
and optional
properties of task IDs are set to null
. This change facilitates the encoding of task IDs in modeling tasks where no value is expected for a given task ID. In model output files, the value in such modeling task task IDs will be NA
.
hubData 0.0.1
- Initial package release resulting from split of
hubUtils
package. See hubUtils
NEWS.md for details including previous release notes.