{
  "_id": "6a5338809b92047c28d56bf3",
  "Package": "hubEnsembles",
  "Title": "Ensemble Methods for Combining Hub Model Outputs",
  "Version": "1.0.0",
  "Authors@R": "c(\nperson(given = \"Li\", family = \"Shandross\", email = \"lshandross@umass.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0008-1348-1954\")),\nperson(given = \"Emily\", family = \"Howerton\", email = \"ehowerton@psu.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-0639-3728\")),\nperson(given = \"Evan L\", family = \"Ray\", email = \"elray@umass.edu\", role = \"aut\"),\nperson(given = \"Anna\", family = \"Krystalli\", email = \"annakrystalli@googlemail.com\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-2378-4915\")),\nperson(given = \"Zhian N.\", family = \"Kamvar\", email = \"zkamvar@gmail.com\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-1458-7108\")),\nperson(given = \"Nicholas G.\", family = \"Reich\", email = \"nick@umass.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-3503-9899\")),\nperson(\"Consortium of Infectious Disease Modeling Hubs\", role = \"cph\")\n)",
  "Description": "Functions for combining model outputs (e.g. predictions or\nestimates) from multiple models into an aggregated ensemble\nmodel output.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/hubverse-org/hubEnsembles,\nhttps://hubverse-org.github.io/hubEnsembles/",
  "BugReports": "https://github.com/hubverse-org/hubEnsembles/issues",
  "Additional_repositories": "https://hubverse-org.r-universe.dev/",
  "Remotes": [
    "hubverse-org/hubExamples",
    "hubverse-org/hubUtils",
    "hubverse-org/hubVis",
    "reichlab/distfromq"
  ],
  "Config/Needs/website": "hubverse-org/hubStyle",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "cmake git make libicu-dev libuv1-dev libssl-dev",
  "Repository": "https://hubverse-org.r-universe.dev",
  "Date/Publication": "2025-05-28 17:00:55 UTC",
  "RemoteUrl": "https://github.com/hubverse-org/hubEnsembles",
  "RemoteRef": "v1.0.0",
  "RemoteSha": "63012e7b19f05e92df0f2c32eb8305c45874c104",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-12 06:44:10 UTC",
    "User": "root"
  },
  "Author": "Li Shandross [aut, cre] (ORCID:\n<https://orcid.org/0009-0008-1348-1954>),\nEmily Howerton [aut] (ORCID: <https://orcid.org/0000-0002-0639-3728>),\nEvan L Ray [aut],\nAnna Krystalli [ctb] (ORCID: <https://orcid.org/0000-0002-2378-4915>),\nZhian N. Kamvar [ctb] (ORCID: <https://orcid.org/0000-0003-1458-7108>),\nNicholas G. Reich [ctb] (ORCID:\n<https://orcid.org/0000-0003-3503-9899>),\nConsortium of Infectious Disease Modeling Hubs [cph]",
  "Maintainer": "Li Shandross <lshandross@umass.edu>",
  "_user": "hubverse-org",
  "_type": "src",
  "_file": "hubEnsembles_1.0.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/97d57a631568492def62adc34d685da5e8b82e4ab2c47409e9b927d94dce22e6",
  "_filesize": 187973,
  "_sha256": "97d57a631568492def62adc34d685da5e8b82e4ab2c47409e9b927d94dce22e6",
  "_expires": "2026-10-20T06:47:27.000Z",
  "_created": "2026-07-12T06:44:10.000Z",
  "_published": "2026-07-12T06:47:28.679Z",
  "_jobs": [
    {
      "job": 86624287938,
      "time": 161,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8257095576"
    },
    {
      "job": 86624287933,
      "time": 153,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8257094582"
    },
    {
      "job": 86624287936,
      "time": 123,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8257090595"
    },
    {
      "job": 86624287935,
      "time": 98,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8257087364"
    },
    {
      "job": 86624048235,
      "time": 220,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8257074636"
    },
    {
      "job": 86624287921,
      "time": 136,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8257092347"
    },
    {
      "job": 86624287931,
      "time": 99,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8257087574"
    },
    {
      "job": 86624287939,
      "time": 82,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8257085500"
    },
    {
      "job": 86624287943,
      "time": 85,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8257086220"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025",
  "_status": "success",
  "_upstream": "https://github.com/hubverse-org/hubEnsembles",
  "_commit": {
    "id": "63012e7b19f05e92df0f2c32eb8305c45874c104",
    "author": "Li Shandross <57642277+lshandross@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #170 from hubverse-org/ls/add-1.0.0-CRAN-SUBMISSION-file\n\nCreate CRAN-SUBMISSION",
    "time": 1748451655
  },
  "_maintainer": {
    "name": "Li Shandross",
    "email": "lshandross@umass.edu",
    "login": "lshandross",
    "description": "Data Scientist | Developing models and other tools for real-time infectious disease forecasting | Mostly program in R, occasionally Python",
    "uuid": 57642277,
    "orcid": "0009-0008-1348-1954"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "distfromq",
      "version": ">= 1.0.2",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "hubUtils",
      "version": ">= 0.0.1",
      "role": "Imports"
    },
    {
      "package": "lifecycle",
      "role": "Imports"
    },
    {
      "package": "matrixStats",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "cowplot",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "hubExamples",
      "role": "Suggests"
    },
    {
      "package": "hubVis",
      "version": ">= 0.0.1",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "hubverse-org",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "hubverse"
  ],
  "_stars": 8,
  "_contributors": [
    {
      "user": "lshandross",
      "count": 343,
      "uuid": 57642277
    },
    {
      "user": "elray1",
      "count": 51,
      "uuid": 5132208
    },
    {
      "user": "annakrystalli",
      "count": 18,
      "uuid": 5583057
    },
    {
      "user": "zkamvar",
      "count": 17,
      "uuid": 3639446
    },
    {
      "user": "micokoch",
      "count": 7,
      "uuid": 56451982
    },
    {
      "user": "bsweger",
      "count": 7,
      "uuid": 540544
    },
    {
      "user": "bisaloo",
      "count": 5,
      "uuid": 10783929
    },
    {
      "user": "nickreich",
      "count": 3,
      "uuid": 1280767
    },
    {
      "user": "eahowerton",
      "count": 2,
      "uuid": 46577370
    }
  ],
  "_userbio": {
    "uuid": 114601542,
    "type": "organization",
    "name": "The Hubverse",
    "followers": 41,
    "description": "A consortium of research groups that run infectious disease modeling hubs."
  },
  "_downloads": {
    "count": 472,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hubEnsembles"
  },
  "_devurl": "https://github.com/hubverse-org/hubensembles",
  "_pkgdown": "https://hubverse-org.github.io/hubEnsembles/",
  "_searchresults": 95,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/hubEnsembles.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/hubverse-org/hubensembles",
  "_realowner": "hubverse-org",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.8",
      "date": "2024-09-26"
    },
    {
      "version": "0.1.9",
      "date": "2024-10-02"
    },
    {
      "version": "1.0.0",
      "date": "2025-05-27"
    }
  ],
  "_exports": [
    "linear_pool",
    "simple_ensemble"
  ],
  "_datasets": [
    {
      "name": "component_outputs",
      "title": "Example model output data for 'linear_pool()'",
      "object": "linear_pool-example_outputs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "model_id",
        "target",
        "output_type",
        "output_type_id",
        "value"
      ],
      "rows": 123,
      "table": true,
      "tojson": true
    },
    {
      "name": "fweights",
      "title": "Example weights data for 'simple_ensemble()'",
      "object": "simple_ensemble-example_weights",
      "class": [
        "data.frame"
      ],
      "fields": [
        "model_id",
        "location",
        "weight"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    },
    {
      "name": "model_outputs",
      "title": "Example model output data for 'simple_ensemble()'",
      "object": "simple_ensemble-example_outputs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "model_id",
        "location",
        "horizon",
        "target",
        "target_date",
        "output_type",
        "output_type_id",
        "value"
      ],
      "rows": 24,
      "table": true,
      "tojson": true
    },
    {
      "name": "weights",
      "title": "Example weights data for 'linear_pool()'",
      "object": "linear_pool-example_weights",
      "class": [
        "data.frame"
      ],
      "fields": [
        "model_id",
        "weight"
      ],
      "rows": 3,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "component_outputs",
      "title": "Example model output data for 'linear_pool()'",
      "topics": [
        "component_outputs"
      ]
    },
    {
      "page": "fweights",
      "title": "Example weights data for 'simple_ensemble()'",
      "topics": [
        "fweights"
      ]
    },
    {
      "page": "linear_pool",
      "title": "Compute ensemble model outputs as a linear pool, otherwise known as a distributional mixture, of component model outputs for each combination of model task, output type, and output type id. Supported output types include 'mean', 'quantile', 'cdf', 'pmf', and 'sample'.",
      "topics": [
        "linear_pool"
      ]
    },
    {
      "page": "make_sample_indices_unique",
      "title": "Make the output type ID values of sample forecasts distinct for different models",
      "topics": [
        "make_sample_indices_unique"
      ]
    },
    {
      "page": "model_outputs",
      "title": "Example model output data for 'simple_ensemble()'",
      "topics": [
        "model_outputs"
      ]
    },
    {
      "page": "simple_ensemble",
      "title": "Compute ensemble model outputs by summarizing component model outputs for each combination of model task, output type, and output type id. Supported output types include 'mean', 'median', 'quantile', 'cdf', and 'pmf'.",
      "topics": [
        "simple_ensemble"
      ]
    },
    {
      "page": "validate_compound_taskid_set",
      "title": "Perform validations on the compound task ID set used to calculate an ensemble of component model outputs for the sample output type, including checks that (1) 'compound_taskid_set' is a subset of 'task_id_cols', (2) the provided 'model_out_tbl' is compatible with the specified 'compound_taskid_set', and (3) all models submit predictions for the same set of non 'compound_taskid_set' variables.",
      "topics": [
        "validate_compound_taskid_set"
      ]
    },
    {
      "page": "weights",
      "title": "Example weights data for 'linear_pool()'",
      "topics": [
        "weights"
      ]
    }
  ],
  "_pkglogo": "https://github.com/hubverse-org/hubEnsembles/raw/v1.0.0/man/figures/logo.png",
  "_readme": "https://github.com/hubverse-org/hubEnsembles/raw/v1.0.0/README.md",
  "_rundeps": [
    "askpass",
    "backports",
    "cachem",
    "checkmate",
    "cli",
    "cpp11",
    "curl",
    "distfromq",
    "dplyr",
    "fastmap",
    "fs",
    "generics",
    "gitcreds",
    "glue",
    "httr2",
    "hubUtils",
    "ini",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "matrixStats",
    "memoise",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "zeallot"
  ],
  "_score": 5.959994838328416,
  "_indexed": true,
  "_nocasepkg": "hubensembles",
  "_universes": [
    "hubverse-org",
    "lshandross"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-07-12T06:46:46.000Z",
      "distro": "resolute",
      "commit": "63012e7b19f05e92df0f2c32eb8305c45874c104",
      "fileid": "https://r2.ropensci.org/51eb6246b27993e4da98592accf91ad397f7858b730c6b50f88eb24500fc96b5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-07-12T06:46:40.000Z",
      "distro": "resolute",
      "commit": "63012e7b19f05e92df0f2c32eb8305c45874c104",
      "fileid": "https://r2.ropensci.org/c4949565733f4301c87ffbd22aa1a28a664f0e5716b7dfa8b09cc82cb52ba8c0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-07-12T06:46:08.000Z",
      "commit": "63012e7b19f05e92df0f2c32eb8305c45874c104",
      "fileid": "https://r2.ropensci.org/66d517527267400e656d73b5b5be60720d62e6bcdbdb34359373991c3043e7c7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-07-12T06:45:47.000Z",
      "commit": "63012e7b19f05e92df0f2c32eb8305c45874c104",
      "fileid": "https://r2.ropensci.org/58b878ccad390c9849a22261731e0a10ff3537786b0a8e62f30b228c24ef8637",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-07-12T06:46:40.000Z",
      "commit": "63012e7b19f05e92df0f2c32eb8305c45874c104",
      "fileid": "https://r2.ropensci.org/de86dab5e7cd71f926b26bf596f49bc7eb6b043760c7119ec3e36d857f337e03",
      "status": "success",
      "buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-07-12T06:45:38.000Z",
      "commit": "63012e7b19f05e92df0f2c32eb8305c45874c104",
      "fileid": "https://r2.ropensci.org/5df5a17a4731db623e45d7575f11bdbaea6a0d43586e0146e275944aa2d2188b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-07-12T06:45:25.000Z",
      "commit": "63012e7b19f05e92df0f2c32eb8305c45874c104",
      "fileid": "https://r2.ropensci.org/3a7a3027f9823772934c0cfd45a0491eebbbcde4ec5fa4155ee55135701f2900",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-07-12T06:45:32.000Z",
      "commit": "63012e7b19f05e92df0f2c32eb8305c45874c104",
      "fileid": "https://r2.ropensci.org/1e989e674285d007dbf7af38c1b03cfac13fb7776ebeb2d4e4fece158db5b931",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hubverse-org/actions/runs/29183003025"
    }
  ]
}